Category: DNA
[NEW] T. Mashiko et al., Phys. Chem. Chem. Phys. 2017, 19, 1627-1631: Theoretical study on substituent and solvent effects for nanocubes formed with gear-shaped amphiphile molecules.
[NEW] A. Gil et al., RSC Adv., 2016, 6, 85891–85902: A theoretical study of methylation and CH/pi interactions in DNA intercalation: methylated 1,10- phenanthroline in adenine–thymine base pairs.
K. A. Wilson et al., Nucleic Acids Res. 2014, 42, 6726–6741: DNA–protein π-interactions in nature: abundance, structure, composition and strength of contacts between aromatic amino acids and DNA nucleobases or deoxyribose sugar.
M. Kaufmann et al., Angew. Chem. Int. Ed. 2009, 48, 3810-3813, 10.1002/anie.20090015: Stable Cyclohexyl-Phenyl Recognition in the Center of a DNA Duplex.
A. Gil et al., J Phys Chem B. 2009, 113, 4907-4914: An analysis of the different behavior of DNA and RNA through the study of the mutual relationship between stacking and hydrogen bonding.
J. C. Morales et al., Chem. Eur. J. 2008, 14, 7828-7835: Experimental Measurement of Carbohydrate-Aromatic Stacking in Water by Using a Dangling-Ended DNA Model System.
S. M. Butterfield et al., J. Org. Chem. 2005, 70, 1105-1114: The recognition of nucleotides with model beta-hairpin receptors: Investigation of critical contacts and nucleotide selectivity.
S. H. Chou et al., Proc. Natl. Acad. Sci., USA 2002, 99, 6625-6630: Looped out and perpendicular: Deformation of Watson-Crick base pair associated with actinomycin D binding.
Y. Umezawa, M. Nishio, Nucleic Acids Res. 2002, 30, 2183-2192: Thymine-methyl/pi interaction implicated in the sequence-dependent deformability of DNA. [See page 'Our papers' for Abstract].
T. Shibata et al., Proc. Natl. Acad. Sci., USA 2001, 98, 8425-8432: Homologous genetic recombination as an intrinsic dynamic property of a DNA structure induced by RecA/Rad51-family proteins: A possible advantage off DNA over RNA as genomic material.
S.-H. Chou, K.-H. Chin, J. Mol. Biol. 2001, 314, 139-152: Quadruple intercalated G6-stack: a possible motif in the fold-back structure of the Drosophila centromeric dodeca-satellite?
S.-H. Chou et al., J. Biomolec. NMR 2001, 19, 33-48: Enhanced loop DNA folding induced by thymine-CH3 group contact and perpendicular guanine-thymine interaction.
Y. Umezawa, M. Nishio, Bioorg. Med. Chem. 2000, 8, 2643-2650: CH/pi interactions in the crystal structure of TATA-box binding protein/DNA complexes. [See page 'Our papers' for Abstract]
L. Yu, H.-J. Schneider, Eur. J. Org. Chem., 1999, 1619-1625: Structural effects on the stability of some hydrogen-bonded complexes with nucleobases.
S.-H. Chou, Y.-Y. Tseng, J. Mol. Biol. 1999, 285, 41-48: Cross-strand purine-pyrimidine stack and sheared purine pairing in the human HIV-1 reverse transcriptase inhibitors.
T. Nishinaka et al., Proc. Natl. Acad. Sci., U.S.A. 1998, 95, 11071-11076: Base pair switching by interconversion of sugar puckers in DNA extended by proteins of RecA-family: A model for homology search in homologous genetic recombination.
T. Nishinaka et al., Proc. Natl. Acad. Sci., U.S.A. 1997, 94, 6623-6628: An extended DNA-structure through deoxyribose-base stacking induced by RecA protein.