DNA
[NEW] M. Kaufmann et al., Angew. Chem. Int. Ed. 2009, 48, 3810-3813, 10.1002/anie.20090015: Stable Cyclohexyl-Phenyl Recognition in the Center of a DNA Duplex.
[NEW] A. Gil et al., J Phys Chem B. 2009, 113, 4907-4914: An analysis of the different behavior of DNA and RNA through the study of the mutual relationship between stacking and hydrogen bonding.
[NEW] J. C. Morales et al., Chem. Eur. J. 2008, 14, 7828-7835: Experimental Measurement of Carbohydrate-Aromatic Stacking in Water by Using a Dangling-Ended DNA Model System.
S. M. Butterfield et al., J. Org. Chem. 2005, 70, 1105-1114: The recognition of nucleotides with model beta-hairpin receptors: Investigation of critical contacts and nucleotide selectivity.
S. H. Chou et al., Proc. Natl. Acad. Sci., USA 2002, 99, 6625-6630: Looped out and perpendicular: Deformation of Watson-Crick base pair associated with actinomycin D binding.
Y. Umezawa, M. Nishio, Nucleic Acids Res. 2002, 30, 2183-2192: Thymine-methyl/pi interaction implicated in the sequence-dependent deformability of DNA. [See page 'Our papers' for Abstract].
http://nar.oupjournals.org/cgi/content/full/30/10/2183?ijkey=9BlkohEIvWVNc&keytype=ref&siteid=nar
T. Shibata et al., Proc. Natl. Acad. Sci., USA 2001, 98, 8425-8432: Homologous genetic recombination as an intrinsic dynamic property of a DNA structure induced by RecA/Rad51-family proteins: A possible advantage off DNA over RNA as genomic material.
S.-H. Chou, K.-H. Chin, J. Mol. Biol. 2001, 314, 139-152: Quadruple intercalated G6-stack: a possible motif in the fold-back structure of the Drosophila centromeric dodeca-satellite?
S.-H. Chou et al., J. Biomolec. NMR 2001, 19, 33-48: Enhanced loop DNA folding induced by thymine-CH3 group contact and perpendicular guanine-thymine interaction.
Y. Umezawa, M. Nishio, Bioorg. Med. Chem. 2000, 8, 2643-2650: CH/pi interactions in the crystal structure of TATA-box binding protein/DNA complexes. [See page 'Our papers' for Abstract]
L. Yu, H.-J. Schneider, Eur. J. Org. Chem., 1999, 1619-1625: Structural effects on the stability of some hydrogen-bonded complexes with nucleobases.
S.-H. Chou, Y.-Y. Tseng, J. Mol. Biol. 1999, 285, 41-48: Cross-strand purine-pyrimidine stack and sheared purine pairing in the human HIV-1 reverse transcriptase inhibitors.
T. Nishinaka et al., Proc. Natl. Acad. Sci., U.S.A. 1998, 95, 11071-11076: Base pair switching by interconversion of sugar puckers in DNA extended by proteins of RecA-family: A model for homology search in homologous genetic recombination.
T. Nishinaka et al., Proc. Natl. Acad. Sci., U.S.A. 1997, 94, 6623-6628: An extended DNA-structure through deoxyribose-base stacking induced by RecA protein.